Codesystem-variant-state.xml

Definition for Code System sequenceStatus

<?xml version="1.0" encoding="UTF-8"?>

<CodeSystem xmlns="http://hl7.org/fhir">
  <id value="variant-state"/> 
  <meta> 
    <lastUpdated value="2021-01-21T15:34:20.265+00:00"/> 
  </meta> 
  <text> 
    <status value="generated"/> 
    <div xmlns="http://www.w3.org/1999/xhtml">
      <h2> sequenceStatus</h2> 
      <div> 
        <p> Codes providing the status of the variant test result.</p> 

      </div> 
      <p> This code system http://terminology.hl7.org/CodeSystem/variant-state defines the following
         codes:</p> 
      <table class="codes">
        <tr> 
          <td style="white-space:nowrap">
            <b> Code</b> 
          </td> 
          <td> 
            <b> Display</b> 
          </td> 
          <td> 
            <b> Definition</b> 
          </td> 
        </tr> 
        <tr> 
          <td style="white-space:nowrap">positive
            <a name="variant-state-positive"> </a> 
          </td> 
          <td> positive</td> 
          <td> the variant is detected.</td> 
        </tr> 
        <tr> 
          <td style="white-space:nowrap">negative
            <a name="variant-state-negative"> </a> 
          </td> 
          <td> negative</td> 
          <td> no variant is detected.</td> 
        </tr> 
        <tr> 
          <td style="white-space:nowrap">absent
            <a name="variant-state-absent"> </a> 
          </td> 
          <td> absent</td> 
          <td> result of the variant is missing.</td> 
        </tr> 
      </table> 
    </div> 
  </text> 
  <url value="http://terminology.hl7.org/CodeSystem/variant-state"/> 
  <identifier> 
    <system value="urn:ietf:rfc:3986"/> 
    <value value="urn:oid:2.16.840.1.113883.4.642.4.1085"/> 
  </identifier> 
  <version value="4.0.1"/> 
  <name value="sequenceStatus"/> 
  <title value="sequenceStatus"/> 
  <status value="draft"/> 
  <experimental value="false"/> 
  <date value="2021-01-21T15:34:20+00:00"/> 
  <publisher value="HL7 (FHIR Project)"/> 
  <contact> 
    <telecom> 
      <system value="url"/> 
      <value value="http://hl7.org/fhir"/> 
    </telecom> 
    <telecom> 
      <system value="email"/> 
      <value value="fhir@lists.hl7.org"/> 
    </telecom> 
  </contact> 
  <description value="Codes providing the status of the variant test result."/> 
  <caseSensitive value="true"/> 
  <valueSet value="http://hl7.org/fhir/ValueSet/variant-state"/> 
  <content value="complete"/> 
  <concept> 
    <code value="positive"/> 
    <display value="positive"/> 
    <definition value="the variant is detected."/> 
  </concept> 
  <concept> 
    <code value="negative"/> 
    <display value="negative"/> 
    <definition value="no variant is detected."/> 
  </concept> 
  <concept> 
    <code value="absent"/> 
    <display value="absent"/> 
    <definition value="result of the variant is missing."/> 
  </concept> 
</CodeSystem>