Release 4


Clinical Genomics Work GroupMaturity Level: N/AStandards Status: InformativeCompartments: Patient

Raw XML (canonical form + also see XML Format Specification)

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MolecularSequence Graphic example-1 (id = "graphic-example-1")

<?xml version="1.0" encoding="UTF-8"?>

<MolecularSequence xmlns="">
    <id value="graphic-example-1"/> 
    <text> <status value="generated"/> <div xmlns=""><p> <b> Generated Narrative with Details</b> </p> <p> <b> id</b> : graphic-example-1</p> <p> <b> type</b> : dna</p> <p> <b> coordinateSystem</b> : 0</p> <h3> ReferenceSeqs</h3> <table> <tr> <td> -</td> <td> <b> ReferenceSeqId</b> </td> <td> <b> Strand</b> </td> <td> <b> WindowStart</b> </td> <td> <b> WindowEnd</b> </td> </tr> <tr> <td> *</td> <td> NC_000002.12 <span> (Details : { code 'NC_000002.12' = 'NC_000002.12)</span> </td> <td> watson</td> <td> 128273724</td> <td> 128273732</td> </tr> </table> <h3> Variants</h3> <table> <tr> <td> -</td> <td> <b> Start</b> </td> <td> <b> End</b> </td> <td> <b> ObservedAllele</b> </td> <td> <b> ReferenceAllele</b> </td> <td> <b> Cigar</b> </td> </tr> <tr> <td> *</td> <td> 128273725</td> <td> 128273726</td> <td> G</td> <td> T</td> <td> 1M</td> </tr> </table> <p> <b> pointer</b> : <a> MolecularSequence/graphic-example-2</a> </p> </div> </text> <type value="dna"/> 
    <coordinateSystem value="0"/> 
            <system value=""/> 
            <code value="NC_000002.12"/> 
        <strand value="watson"/> 
        <windowStart value="128273724"/> 
        <windowEnd value="128273732"/> 
        <start value="128273725"/> 
        <end value="128273726"/> 
        <observedAllele value="G"/> 
        <referenceAllele value="T"/> 
        <cigar value="1M"/> 
        <reference value="MolecularSequence/graphic-example-2"/> 

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.